All Publications Related to Research Area: E-Science

Gabb, H.A. and Blake, C. (2016). An informatics approach to cumulative
chemical exposure from consumer products: A case study for asthma-associated and endocrine disrupting chemicals.  Environmental Health Perspectives. http://dx.doi.org/10.1289/ehp.1510529
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Souden,M. Blake, C., Twidale,M., Anderson,C. Stelmack, J., (2015) Making sense of big data: Online question answering practices supporting healthcare data re-use. 8th Annual Conference on the Science of Dissemination and Implementation: Optimizing Personal and Population Health, December 14-15, 2015, Washington D.C.
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Sherman, G., Blake, C. & Lee, J. (2015) Identifying population characteristics from tables in full text articles, American Medical Informatics Association Symposium, Nov.14-18, 2015, San Francisco, CA.
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Blake, C., Souden,M., Anderson, C.L., Twidale, M., and Stelmack, J.E. (2015) Online Question Answering Practices Supporting Healthcare Data Re-use, Annual Meeting of the American Society for Information Science and Technology (ASIS&T),Nov.6-10th,2015, St Louis, MO.
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Dey, S., Belhajjame, K., Koop, D., Raul, M., & Ludäscher, B. (2015). Linking Prospective and Retrospective Provenance for Scripts. In Intl. Workshop on Theory and Practice of Provenance (TaPP).
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Evans, C., Diesner, J. and Blake, C. (2015), Email Data Analysis as an Alternate Lens into Historical Events, HASTAC Conference,May 27-30, 2015, Lansing, MI,.
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Blake, C. (2015). Biological responses to chemical exposure: Case studies in how to manage ostensible inconsistencies using the Claim Framework. In C.Hewitt & J.Woods (Eds.), Inconsistency Robustness (Studies in Logic)(Vol.52).

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Franz NM, Chen M, Yu S, Kianmajd P, Bowers S, Ludäscher B (2015) Reasoning over Taxonomic Change: Exploring Alignments for the Perelleschus Use Case. PLoS ONE 10(2): e0118247. doi:10.1371/journal.pone.0118247
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Franz, N. M., Pier, N. M., Reeder, D. M., Chen, M., Yu, S., Kianmajd, P., ... & Ludäscher, B. (2014). Taxonomic provenance: two influential primate classifications logically aligned. arXiv preprint arXiv:1412.1025.
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Song, T., Köhler, S., Ludäscher, B., Hanken, J., Kelly, M., Lowery, D., ... & Morris, R. A. (2014). Towards automated design, analysis and optimization of declarative curation workflows. International Journal of Digital Curation, 9(2), 111-122.
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Varvel, V. E. Jr., & Shen, Y. (2013). Data management consulting at the Johns Hopkins University. New Review of Academic Librarianship, 19(2), 224-245. doi:10.1080/13614533.2013.768277
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Choudhury, S., Palmer, C., Baker, K., & DiLauro, T. (2013, January). Levels of services and curation for high-functioning data. Poster presented at the 8th International Digital Curation Conference, Amsterdam, Netherlands.
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Weber, N., Baker, K., Thomer, A., Chao, T., & Palmer, C. (2012, October). Value and Context in Data Use: Domain Analysis Revisited. Paper presented at the ASIST 2012 Annual Meeting, Baltimore, MD. Retrieved from http://www.asis.org/asist2012/abstracts/168.html
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Wickett, K., Sacchi, S., Dubin, D., & Renear, A. (2012, October). Identifying Content and Levels of Representation in Scientific Data. Paper presented at the ASIST 2012 Annual Meeting, Baltimore, MD. Retrieved from http://www.asis.org/asist2012/abstracts/199.html
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Hoon Park, D., & Blake, C. (2012, July) Identifying comparative sentences in full-text scientific articles. In Proceedings of the Association of Computational Linguistics, Workshop on Detecting Structure in Scholarly Discourse (pp. 1-9), Jeju, South Korea.
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AbdelRahman, S. E., & Blake, C. (2012, June). UIUC_RuleBased: Sbdlrhmn: A rule-based human interpretation system for semantic textual similarity task. Workshop on Semantic Evaluation at SemEval 2012: Semantic Evaluation Exercises, Montreal, Canada.
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Wickett, K. M., Thomer, A., Sacchi, S., Baker, K. S., & Dubin, D. (2012, March/April). What dataset descriptions actually describe: Using systematic assertion model to connect theory and practice. Poster presented at the 2012 ASIS&T Research Data Access and Preservation Summit, New Orleans, LA. Retrieved April 30, 2012 from, http://hdl.handle.net/2142/30470
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Wickett, K. M., Urban, R. J., & Renear, A. H. (2012). Towards a Logical Form for Descriptive Metadata [poster]. In Proceedings of the 2012 iConference (pp. 574-575). ACM. doi:10.1145/2132176.2132294
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Varvel, V. E., Bammerlin, E. J., & Palmer, C. L. (2012). Education for Data Professionals: A Study of Current Courses and Programs[poster]. In Proceedings of the 2012 iConference (pp. 10-12). doi:10.1145/2132176.2132275
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Chao, T. C. (2012). Exploring the Rhythms of Scientific Data Use. In Proceedings of the 2012 iConference (pp. 129-135). ACM. doi:10.1145/2132176.2132193
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Sacchi, S., Renear, A., Dubin, D. (2011, December). One thing missing or two things are confused: An analysis of OAIS representation information. Poster presented at the International Digital Curation Conference (IDCC), Bristol, UK. Retrieved April 30, 2012 from, http://www.dcc.ac.uk/webfm_send/665
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Tenopir, C., Van der Hoeven, J., Palmer, C. L., Malone, J., & Sinha, P. (2011, October). Sharing data: Practices, barriers, and incentives. Panel presented at the American Society for Information Science and Technology Annual Meeting, New Orleans, LA. Retrieved April 30, 2012 from http://hdl.handle.net/2142/30640.
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Palmer, C. L., Weber, N. M., & Cragin, M. H. (2011, October). The Analytic Potential of Scientific Data: Understanding Re-use Value. In Proceedings of the Annual Meeting of the American Society for Information Science & Technology (ASIS&T), New Orleans, LA.
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Sacchi, S., Wickett, K. M., Renear, A. H., & Dubin, D.S. (2011, October). A Framework for Applying the Concept of Significant Properties to Datasets. In Proceedings of the Annual Meeting of the American Society for Information Science & Technology (ASIS&T), New Orleans, LA.
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Wickett, K. M., Renear, A. H., & Furner, J. (2011, October). Are Collections Sets? In Proceedings of the American Society for Information Science and Technology (ASIS&T), New Orleans, LA.
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Palmer, C. L. (2011, September). Investing in research data. Closing address for the Illinois Research Data Initiative Opening Symposium. Urbana, IL.
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Varvel, V. E. Jr. (2011). Data Conservancy cyberinfrastructure early development case study. (CIRSS Report DC1101). Champaign, IL: Center for Informatics Research in Science and Scholarship.
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Dubin, D., Wickett, K., & Sacchi, S. (2011, August). Content, format, and interpretation. Paper presented at Balisage: The Markup Conference 2011, Montrèal, QC, Canada. Retrieved April 30, 2012 from, http://www.balisage.net/Proceedings/vol7/html/Dubin01/BalisageVol7-Dubin01.html
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Dubin, D. (2011, June). Data Theory and Scientific Data Management. [presentation]. Presented at the 2011 Annual Meeting of the Classification Society.
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Palmer, C., Weber, N., & Cragin, M. (2011, June). Analytic Potential of Data: Assessing Reuse Value. Poster presented at the Joint Conference on Digital Libraries (JCDL), Ottawa, ON.
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Cragin, M. H., Chao, T. C. & Palmer, C. L. (2011, June). Units of Evidence for Analyzing Subdisciplinary Difference in Data Practice Studies. Poster presented at the Joint Conference on Digital Libraries (JCDL), Ottawa, ON.
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Cragin, M. H. (2011, April). Growing the curation community in LIS: Current research and educational initiatives. Paper presented at the 2011 Annual Conference of the Wisconsin Association of Academic Librarians, Stevens Point, WI.
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Palmer, C. L., Chao, T. C., Weber, N. M., Sacchi, S., Wickett, K. M., Renear, A. H., Baker, K., Thomer, A., Dubin, D. (2012, March). Integrating conceptual and empirical studies of data to guide curatorial processes. Poster presented at the 2nd Research Data Access & Preservation (RDAP) Summit, Denver, CO.
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Blake, C. L. (2011). Text mining. Annual Review of Information Science and Technology, 45, 121-155. doi:10.1002/aris.2011.1440450110
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Varvel, V. E. Jr., Palmer, C. L., Chao, T., & Sacchi, S. (2011). Report from the Research Data Workforce Summit: Sponsored by the Data Conservancy. [Report from summit presented during the 6th International Digital Curation Conference, December 6, 2010, Chicago, IL] Champaign, IL: Center for Informatics Research in Science & Scholarship, University of Illinois.
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Palmer, C. L. (2010, November).The Data Conservancy and data curation research and education at CIRSS. Presentation for the University of Illinois Data Stewardship committee, Urbana, IL.
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Renear, A., Sacchi, S., & Wickett, K. (2010, October 22-27). Definitions of dataset in the scientific and technical literature. Proceedings of the Annual Meeting of the American Society for Information Science & Technology (ASIS&T), October 22-27, 2010, Pittsburgh, PA.
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Cragin, M. H., Palmer, C. L., Carlson, J. R., & Witt, M. (2010). Data sharing, small science, and institutional repositories. Philosophical Transactions of the Royal Society A, 368(1926), 4023-4038. doi:10.1098/rsta.2010.0165
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Blake, C., Zheng, W., Painter, K., & Weyerhaeuser, W. (2010) The Role of Semantics in Recognizing Textual Entailment. Paper presented at the Text Analysis Conference (TAC) 2010 Recognizing Textual Entailment Track (RTE-6), Gaithersburg, MD.
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Blake, C. (2010) Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles. Journal of Biomedical Informatics, 43(2), 173-189. doi:10.1016/j.jbi.2009.11.001
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Zheng, W., & Blake, C. (2010, February). Automatic extraction of location relations from text. Poster from iConference 2010. Champaign, IL.
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Witt, M., Carlson, J., Brandt, D. S., & Cragin, M. H. (2009). Constructing data curation profiles. International Journal of Digital Curation, 4(3). 93-103.
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Cragin, M. H., Smith, L. C., Palmer, C. L., & Heidorn, P. B. (2009, April 1-3). Extending the data curation curriculum to practicing LIS professionals. Panel for DigCCurr 2009: Digital Curation Practice, Promise and Prospects, Chapel Hill, NC.
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Palmer, C. L., Renear, A. H., & Cragin, M. H. (2008, December). Purposeful curation: Research and education for a future with working data. Poster presented at the 4th Annual International Digital Curation Conference, Edinburgh, Scotland
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Brandt, D. S., Carlson, J., Cragin, M. H., Heidorn, B., Palmer, C. L., Shreeves, S., & Witt, M. (2008, December). Investigating data curation profiles across multiple research disciplines. Poster presented at the 4th Annual International Digital Curation Conference, Edinburgh, Scotland.
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Heidorn, P. B. (2008). Shedding light on the dark data in the long tail of science. Library Trends, 57(2), 280-299.
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Smith, L. C., Cragin, M. H., Heidorn, P. B., Palmer, C. L., & MacMullen, W. J. (2008, June 20). Developing an effective data curation education program. Presentation at the "Education for Digital Stewardship: Librarians, Archivists or Curators?" workshop at the Joint Conference on Digital Libraries (JCDL), Pittsburgh, PA.
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Palmer, C. L., Heidorn, P. B., Wright, D., & Cragin, M. H. (2007). Graduate Curriculum for Biological Information Specialists: A key to integration of scale in biology. International Journal of Data Curation, 2(2), 31-40.
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Heidorn, P. B., Palmer, C. L., Wright, D., & Cragin, M. H. (2007, October 25-28). Biological Information Specialist’s Training. Poster session presented at the 2nd International BioCuration Meeting, San Jose, CA
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Tang, X., & Heidorn, P. B. (2007). The loss of domain knowledge in user search queries: A query log analysis of a botanical retrieval system. Presented at the 70th Annual Meeting of the American Society for Information Science and Technology. Milwaukee, Wisconsin.
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Hong, C., & Heidorn, P. B. (2007). The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions. Journal of the American Society for Information Science and Technology, 58(1), 133-149.
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Heidorn, P. B. (2007, October 25). Biological information management from molecules to ecosystems. Panel on “Biological Information Specialist Training,” at 2nd International BioCuration Meeting. San Jose, CA.
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Blake, C. (2007). In support of e-science - Shifting from information retrieval to information synthesis, [Workshop Abstract] 2007 Microsoft eScience Workshop at RENCI. Chapel Hill, NC.
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Heidorn, P. B., Wei, Q. (2007, September). Using New Technologies for Education and Communication. Biodiversity Information Standards (TDWG) Annual Conference. Bratislava, Slovakia.
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Heidorn, P. B., Palmer, C. L., Wright, D., & Cragin, M. H. (2007, July 7-11). Information Specialist’s Training in Biology. Poster session presented at Plant Science and Botany 2007 Conference, Chicago.
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Blake, C. (2007) The role of sentence structure in recognizing textual entailment. Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing, p101-6. Prague, Czech Republic.
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Cragin, M. H., Heidorn, P. B., Palmer, C. L., & Smith, L. C. (2007, June 21-27). An Educational Program on Data Curation. Poster session presented at the Science and Technology Section program: Issues and Trends in Digital Repositories of Non-textual Information: Support for Research and Teaching. ALA Annual Conference, Washington D.C.
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Heidorn, P. B., Palmer, C. L., & Wright, D. (2007). Biological Information Specialists for Biological Informatics. Journal of Biomedical Discovery and Collaboration, 2(1). doi:10.1186/1747-5333-2-1
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Heidorn, P. B., Palmer, C. L., Wright, D., & Cragin, M. H. (2006). Graduate Curriculum for Biological Information Specialists: A key to integration of Scale in Biology. In Proceedings of the 2nd International Digital Curation Conference, “Digital Data Curation in Practice.” Glasgow, Scotland, November 21-22, 2006.
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Blake, C., & Pratt, W. (2006). Collaborative information synthesis I: A model of information behaviors of scientists in medicine and public health. Journal of the American Society for Information Science and Technology, 57(13), 1740-1749.
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Blake, C., & Pratt, W. (2006). Collaborative information synthesis II: Recommendations for information systems that support synthesis activities. Journal of the American Society for Information Science and Technology, 57(14), 1888-95.
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Palmer, C. L., Cragin, M. H., & Heidorn, P. B. (2007). Supporting biological information work: Research and education for digital resources and long-lived data. The 6th ACM/IEEE-CS Joint Conference on Digital Libraries (pg. 353), Vancouver, BC, Canada.
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Palmer, C. L., Cragin, M. H., Heidorn, P. B., & Wright, D. (2006, June 11-15). Supporting biological information work: Research and education for digital resources and long-lived data. Poster presented at the Joint Conference on Digital Libraries, Chapel Hill, NC.
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Blake, C. (2006). A Comparison of Document, Sentence and Term Event Spaces, In Proceedings of the Joint 21st International Conference on Computational Linguistics (COLING) and the 44th Annual Meeting of the Association for Computational Linguistics (ACL), p601-8, Sydney, Australia.
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Heidorn, P. B., Palmer, C. L., & Wright, D. (2006). A Graduate Program for Biological Information Specialists. (UIUC GSLIS Technical Report 3 UIUCLIS-2006/2+SCI). Urbana, IL: University of Illinois.
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